Simon J Cockell

Simon J Cockell

Senior Lecturer in Bioinformatics and Director of Research, School of Biomedical, Nutritional and Sport Sciences, Newcastle University.

Publications

Quantitative modeling of human liver reveals dysregulation of glycosphingolipid pathways in nonalcoholic fatty liver disease

Published in iScience, 2022

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Recommended citation: Partho Sen, Olivier Govaere, Tim Sinioja, Aidan McGlinchey, Dawei Geng, Vlad Ratziu, Elisabetta Bugianesi, Jörn Schattenberg, Antonio Vidal-Puig, Michael Allison, Simon Cockell, Ann Daly, Tuulia Hyötyläinen, Quentin Anstee, Matej Orešič, "Quantitative modeling of human liver reveals dysregulation of glycosphingolipid pathways in nonalcoholic fatty liver disease." iScience, 2022.

Blood mRNA Expression in Alzheimer's Disease and Dementia With Lewy Bodies

Published in The American Journal of Geriatric Psychiatry: Official Journal of the American Association for Geriatric Psychiatry, 2022

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Recommended citation: Paul Donaghy, Simon Cockell, Carmen Martin-Ruiz, Jonathan Coxhead, Joseph Kane, Daniel Erskine, David Koss, John-Paul Taylor, Christopher Morris, John O'Brien, Alan Thomas, "Blood mRNA Expression in Alzheimer's Disease and Dementia With Lewy Bodies." The American Journal of Geriatric Psychiatry: Official Journal of the American Association for Geriatric Psychiatry, 2022.

Mechanical-Stress-Related Epigenetic Regulation of ZIC1 Transcription Factor in the Etiology of Postmenopausal Osteoporosis

Published in International Journal of Molecular Sciences, 2022

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Recommended citation: Harish Datta, Marianne Kringen, Stephen Tuck, Georgia Salpingidou, Ole Olstad, Kaare Gautvik, Simon Cockell, Vigdis Gautvik, Michael Prediger, Jun Wu, Mark Birch, Sjur Reppe, "Mechanical-Stress-Related Epigenetic Regulation of ZIC1 Transcription Factor in the Etiology of Postmenopausal Osteoporosis." International Journal of Molecular Sciences, 2022.

Increased serum miR-193a-5p during non-alcoholic fatty liver disease progression: Diagnostic and mechanistic relevance

Published in JHEP reports: innovation in hepatology, 2022

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Recommended citation: Katherine Johnson, Peter Leary, Olivier Govaere, Matthew Barter, Sarah Charlton, Simon Cockell, Dina Tiniakos, Michalina Zatorska, Pierre Bedossa, M. Brosnan, Jeremy Cobbold, Mattias Ekstedt, Guruprasad Aithal, Karine Clément, Jörn Schattenberg, Jerome Boursier, Vlad Ratziu, Elisabetta Bugianesi, Quentin Anstee, Ann Daly, "Increased serum miR-193a-5p during non-alcoholic fatty liver disease progression: Diagnostic and mechanistic relevance." JHEP reports: innovation in hepatology, 2022.

Type I interferon receptor (IFNAR2) deficiency reveals Zika virus cytopathicity in human macrophages and microglia

Published in Frontiers in Immunology, 2022

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Recommended citation: Aidan Hanrath, Catherine Hatton, Florian Gothe, Cathy Browne, Jane Vowles, Peter Leary, Simon Cockell, Sally Cowley, William James, Sophie Hambleton, Christopher Duncan, "Type I interferon receptor (IFNAR2) deficiency reveals Zika virus cytopathicity in human macrophages and microglia." Frontiers in Immunology, 2022.

A de novo paradigm for male infertility

Published in Nature Communications, 2022

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Recommended citation: M. Oud, R. Smits, H. Smith, F. Mastrorosa, G. Holt, B. Houston, P. Vries, B. Alobaidi, L. Batty, H. Ismail, J. Greenwood, H. Sheth, A. Mikulasova, G. Astuti, C. Gilissen, K. McEleny, H. Turner, J. Coxhead, S. Cockell, D. Braat, K. Fleischer, K. D'Hauwers, E. Schaafsma, L. Nagirnaja, D. Conrad, C. Friedrich, S. Kliesch, K. Aston, A. Riera-Escamilla, C. Krausz, C. Gonzaga-Jauregui, M. Santibanez-Koref, D. Elliott, L. Vissers, F. Tüttelmann, M. O'Bryan, L. Ramos, M. Xavier, G. Heijden, J. Veltman, "A de novo paradigm for male infertility." Nature Communications, 2022.

Distinct gene expression profiles between human preterm-derived and adult-derived intestinal organoids exposed to Enterococcus faecalis: a pilot study

Published in Gut, 2021

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Recommended citation: Andrea Masi, Tatiana Fofanova, Christopher Lamb, Jennifer Auchtung, Robert Britton, Mary Estes, Sasirekha Ramani, Simon Cockell, Jonathan Coxhead, Nicholas Embleton, Janet Berrington, Joseph Petrosino, Christopher Stewart, "Distinct gene expression profiles between human preterm-derived and adult-derived intestinal organoids exposed to Enterococcus faecalis: a pilot study." Gut, 2021.

Transcriptomics Identify Thrombospondin-2 as a Biomarker for NASH and Advanced Liver Fibrosis

Published in Hepatology (Baltimore, Md.), 2021

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Recommended citation: Kazuhiro Kozumi, Takahiro Kodama, Hiroki Murai, Sadatsugu Sakane, Olivier Govaere, Simon Cockell, Daisuke Motooka, Naruyasu Kakita, Yukinori Yamada, Yasuteru Kondo, Yuki Tahata, Ryoko Yamada, Hayato Hikita, Ryotaro Sakamori, Yoshihiro Kamada, Ann Daly, Quentin Anstee, Tomohide Tatsumi, Eiichi Morii, Tetsuo Takehara, "Transcriptomics Identify Thrombospondin-2 as a Biomarker for NASH and Advanced Liver Fibrosis." Hepatology (Baltimore, Md.), 2021.

Network medicine for disease module identification and drug repurposing with the NeDRex platform

Published in Nature Communications, 2021

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Recommended citation: Sepideh Sadegh, James Skelton, Elisa Anastasi, Judith Bernett, David Blumenthal, Gihanna Galindez, Marisol Salgado-Albarrán, Olga Lazareva, Keith Flanagan, Simon Cockell, Cristian Nogales, Ana Casas, Harald Schmidt, Jan Baumbach, Anil Wipat, Tim Kacprowski, "Network medicine for disease module identification and drug repurposing with the NeDRex platform." Nature Communications, 2021.

Therapeutic wavelengths of ultraviolet B radiation activate apoptotic, circadian rhythm, redox signalling and key canonical pathways in psoriatic epidermis

Published in Redox Biology, 2021

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Recommended citation: Rachel Addison, Sophie Weatherhead, Anandika Pawitri, Graham Smith, Ashley Rider, Henry Grantham, Simon Cockell, Nick Reynolds, "Therapeutic wavelengths of ultraviolet B radiation activate apoptotic, circadian rhythm, redox signalling and key canonical pathways in psoriatic epidermis." Redox Biology, 2021.

NASH limits anti-tumour surveillance in immunotherapy-treated HCC

Published in Nature, 2021

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Recommended citation: Dominik Pfister, Nicolás Núñez, Roser Pinyol, Olivier Govaere, Matthias Pinter, Marta Szydlowska, Revant Gupta, Mengjie Qiu, Aleksandra Deczkowska, Assaf Weiner, Florian Müller, Ankit Sinha, Ekaterina Friebel, Thomas Engleitner, Daniela Lenggenhager, Anja Moncsek, Danijela Heide, Kristin Stirm, Jan Kosla, Eleni Kotsiliti, Valentina Leone, Michael Dudek, Suhail Yousuf, Donato Inverso, Indrabahadur Singh, Ana Teijeiro, Florian Castet, Carla Montironi, Philipp Haber, Dina Tiniakos, Pierre Bedossa, Simon Cockell, Ramy Younes, Michele Vacca, Fabio Marra, Jörn Schattenberg, Michael Allison, Elisabetta Bugianesi, Vlad Ratziu, Tiziana Pressiani, Antonio D'Alessio, Nicola Personeni, Lorenza Rimassa, Ann Daly, Bernhard Scheiner, Katharina Pomej, Martha Kirstein, Arndt Vogel, Markus Peck-Radosavljevic, Florian Hucke, Fabian Finkelmeier, Oliver Waidmann, Jörg Trojan, Kornelius Schulze, Henning Wege, Sandra Koch, Arndt Weinmann, Marco Bueter, Fabian Rössler, Alexander Siebenhüner, Sara De, Jan-Philipp Mallm, Viktor Umansky, Manfred Jugold, Tom Luedde, Andrea Schietinger, Peter Schirmacher, Brinda Emu, Hellmut Augustin, Adrian Billeter, Beat Müller-Stich, Hiroto Kikuchi, Dan Duda, Fabian Kütting, Dirk-Thomas Waldschmidt, Matthias Ebert, Nuh Rahbari, Henrik Mei, Axel Schulz, Marc Ringelhan, Nisar Malek, Stephan Spahn, Michael Bitzer, Marina Galarreta, Amaia Lujambio, Jean-Francois Dufour, Thomas Marron, Ahmed Kaseb, Masatoshi Kudo, Yi-Hsiang Huang, Nabil Djouder, Katharina Wolter, Lars Zender, Parice Marche, Thomas Decaens, David Pinato, Roland Rad, Joachim Mertens, Achim Weber, Kristian Unger, Felix Meissner, Susanne Roth, Zuzana Jilkova, Manfred Claassen, Quentin Anstee, Ido Amit, Percy Knolle, Burkhard Becher, Josep Llovet, Mathias Heikenwalder, "NASH limits anti-tumour surveillance in immunotherapy-treated HCC." Nature, 2021.

Transcriptomic profiling across the nonalcoholic fatty liver disease spectrum reveals gene signatures for steatohepatitis and fibrosis

Published in Science Translational Medicine, 2020

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Recommended citation: Olivier Govaere, Simon Cockell, Dina Tiniakos, Rachel Queen, Ramy Younes, Michele Vacca, Leigh Alexander, Federico Ravaioli, Jeremy Palmer, Salvatore Petta, Jerome Boursier, Chiara Rosso, Katherine Johnson, Kristy Wonders, Christopher Day, Mattias Ekstedt, Matej Orešič, Rebecca Darlay, Heather Cordell, Fabio Marra, Antonio Vidal-Puig, Pierre Bedossa, Jörn Schattenberg, Karine Clément, Michael Allison, Elisabetta Bugianesi, Vlad Ratziu, Ann Daly, Quentin Anstee, "Transcriptomic profiling across the nonalcoholic fatty liver disease spectrum reveals gene signatures for steatohepatitis and fibrosis." Science Translational Medicine, 2020.

Genome-wide association study of non-alcoholic fatty liver and steatohepatitis in a histologically characterised cohort☆

Published in Journal of Hepatology, 2020

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Recommended citation: Quentin Anstee, Rebecca Darlay, Simon Cockell, Marica Meroni, Olivier Govaere, Dina Tiniakos, Alastair Burt, Pierre Bedossa, Jeremy Palmer, Yang-Lin Liu, Guruprasad Aithal, Michael Allison, Hannele Yki-Järvinen, Michele Vacca, Jean-Francois Dufour, Pietro Invernizzi, Daniele Prati, Mattias Ekstedt, Stergios Kechagias, Sven Francque, Salvatore Petta, Elisabetta Bugianesi, Karine Clement, Vlad Ratziu, Jörn Schattenberg, Luca Valenti, Christopher Day, Heather Cordell, Ann Daly, "Genome-wide association study of non-alcoholic fatty liver and steatohepatitis in a histologically characterised cohort☆." Journal of Hepatology, 2020.

Understanding the complexity of retina and pluripotent stem cell derived retinal organoids with single cell RNA sequencing: current progress, remaining challenges and future prospective

Published in Current Eye Research, 2020

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Recommended citation: Darin Zerti, Joseph Collin, Rachel Queen, Simon Cockell, Majlinda Lako, "Understanding the complexity of retina and pluripotent stem cell derived retinal organoids with single cell RNA sequencing: current progress, remaining challenges and future prospective." Current Eye Research, 2020.

Pax9 is required for cardiovascular development and interacts with Tbx1 in the pharyngeal endoderm to control 4th pharyngeal arch artery morphogenesis

Published in Development (Cambridge, England), 2019

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Recommended citation: Helen Phillips, Catherine Stothard, Wasay Shaikh, Anastasia Kousa, J. Briones-Leon, Ramada Khasawneh, Chloe O'Loughlin, Rachel Sanders, Silvia Mazzotta, Rebecca Dodds, Kerstin Seidel, Timothy Bates, Mitsushiro Nakatomi, Simon Cockell, Jürgen Schneider, Timothy Mohun, René Maehr, Ralf Kist, Heiko Peters, Simon Bamforth, "Pax9 is required for cardiovascular development and interacts with Tbx1 in the pharyngeal endoderm to control 4th pharyngeal arch artery morphogenesis." Development (Cambridge, England), 2019.

Androgen-regulated transcription of ESRP2 drives alternative splicing patterns in prostate cancer

Published in eLife, 2019

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Recommended citation: Jennifer Munkley, Ling Li, S. Krishnan, Gerald Hysenaj, Emma Scott, Caroline Dalgliesh, Htoo Oo, Teresa Maia, Kathleen Cheung, Ingrid Ehrmann, Karen Livermore, Hanna Zielinska, Oliver Thompson, Bridget Knight, Paul McCullagh, John McGrath, Malcolm Crundwell, Lorna Harries, Mads Daugaard, Simon Cockell, Nuno Barbosa-Morais, Sebastian Oltean, David Elliott, "Androgen-regulated transcription of ESRP2 drives alternative splicing patterns in prostate cancer." eLife, 2019.

High-throughput sequencing identifies aetiology-dependent differences in ductular reaction in human chronic liver disease

Published in The Journal of Pathology, 2019

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Recommended citation: Olivier Govaere, Simon Cockell, Matthias Van, Jasper Wouters, Wouter Van, Kathleen Eynde, Arianna Bianchi, Rudy Eijsden, Werner Van, Diethard Monbaliu, Frederik Nevens, Tania Roskams, "High-throughput sequencing identifies aetiology-dependent differences in ductular reaction in human chronic liver disease." The Journal of Pathology, 2019.

Deconstructing Retinal Organoids: Single Cell RNA-Seq Reveals the Cellular Components of Human Pluripotent Stem Cell-Derived Retina

Published in Stem Cells (Dayton, Ohio), 2019

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Recommended citation: Joseph Collin, Rachel Queen, Darin Zerti, Birthe Dorgau, Rafiqul Hussain, Jonathan Coxhead, Simon Cockell, Majlinda Lako, "Deconstructing Retinal Organoids: Single Cell RNA-Seq Reveals the Cellular Components of Human Pluripotent Stem Cell-Derived Retina." Stem Cells (Dayton, Ohio), 2019.

An ancient germ cell-specific RNA-binding protein protects the germline from cryptic splice site poisoning

Published in eLife, 2019

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Recommended citation: Ingrid Ehrmann, James Crichton, Matthew Gazzara, Katherine James, Yilei Liu, Sushma Grellscheid, Tomaž Curk, Dirk Rooij, Jannetta Steyn, Simon Cockell, Ian Adams, Yoseph Barash, David Elliott, "An ancient germ cell-specific RNA-binding protein protects the germline from cryptic splice site poisoning." eLife, 2019.

RRAD, IL4I1, CDKN1A, and SERPINE1 genes are potentially co-regulated by NF-κB and p53 transcription factors in cells exposed to high doses of ionizing radiation

Published in BMC genomics, 2018

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Recommended citation: Katarzyna Szołtysek, Patryk Janus, Gracjana Zając, Tomasz Stokowy, Anna Walaszczyk, Wiesława Widłak, Bartosz Wojtaś, Bartłomiej Gielniewski, Simon Cockell, Neil Perkins, Marek Kimmel, Piotr Widlak, "RRAD, IL4I1, CDKN1A, and SERPINE1 genes are potentially co-regulated by NF-κB and p53 transcription factors in cells exposed to high doses of ionizing radiation." BMC genomics, 2018.

B-cell activity markers are associated with different disease activity domains in primary Sjögren's syndrome

Published in Rheumatology (Oxford, England), 2018

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Recommended citation: Katherine James, Chimwemwe Chipeta, Antony Parker, Stephen Harding, Simon Cockell, Colin Gillespie, Jennifer Hallinan, Francesca Barone, Simon Bowman, Wan-Fai Ng, Benjamin Fisher, "B-cell activity markers are associated with different disease activity domains in primary Sjögren's syndrome." Rheumatology (Oxford, England), 2018.

Pro-inflammatory cytokine and high doses of ionizing radiation have similar effects on the expression of NF-kappaB-dependent genes

Published in Cellular Signalling, 2018

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Recommended citation: Patryk Janus, Katarzyna Szołtysek, Gracjana Zając, Tomasz Stokowy, Anna Walaszczyk, Wiesława Widłak, Bartosz Wojtaś, Bartłomiej Gielniewski, Marta Iwanaszko, Rosemary Braun, Simon Cockell, Neil Perkins, Marek Kimmel, Piotr Widlak, "Pro-inflammatory cytokine and high doses of ionizing radiation have similar effects on the expression of NF-kappaB-dependent genes." Cellular Signalling, 2018.

Transcriptomics and proteomics show that selenium affects inflammation, cytoskeleton, and cancer pathways in human rectal biopsies

Published in FASEB journal: official publication of the Federation of American Societies for Experimental Biology, 2016

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Recommended citation: Catherine Méplan, Ian Johnson, Abigael Polley, Simon Cockell, David Bradburn, Daniel Commane, Ramesh Arasaradnam, Francis Mulholland, Anze Zupanic, John Mathers, John Hesketh, "Transcriptomics and proteomics show that selenium affects inflammation, cytoskeleton, and cancer pathways in human rectal biopsies." FASEB journal: official publication of the Federation of American Societies for Experimental Biology, 2016.

Analysis of primary visual cortex in dementia with Lewy bodies indicates GABAergic involvement associated with recurrent complex visual hallucinations

Published in Acta Neuropathologica Communications, 2016

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Recommended citation: Ahmad Khundakar, Peter Hanson, Daniel Erskine, Nichola Lax, Joseph Roscamp, Evangelia Karyka, Eliona Tsefou, Preeti Singh, Simon Cockell, Andrew Gribben, Lynne Ramsay, Peter Blain, Urs Mosimann, Deborah Lett, Matthias Elstner, Douglass Turnbull, Charles Xiang, Michael Brownstein, John O'Brien, John-Paul Taylor, Johannes Attems, Alan Thomas, Ian McKeith, Christopher Morris, "Analysis of primary visual cortex in dementia with Lewy bodies indicates GABAergic involvement associated with recurrent complex visual hallucinations." Acta Neuropathologica Communications, 2016.

Zinc sensing by metal-responsive transcription factor 1 (MTF1) controls metallothionein and ZnT1 expression to buffer the sensitivity of the transcriptome response to zinc

Published in Metallomics: Integrated Biometal Science, 2016

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Recommended citation: J. Hardyman, J. Tyson, K. Jackson, C. Aldridge, S. Cockell, L. Wakeling, R. Valentine, D. Ford, "Zinc sensing by metal-responsive transcription factor 1 (MTF1) controls metallothionein and ZnT1 expression to buffer the sensitivity of the transcriptome response to zinc." Metallomics: Integrated Biometal Science, 2016.

SIRT1 affects DNA methylation of polycomb group protein target genes, a hotspot of the epigenetic shift observed in ageing

Published in Human Genomics, 2015

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Recommended citation: Luisa Wakeling, Laura Ions, Suzanne Escolme, Simon Cockell, Tianhong Su, Madhurima Dey, Emily Hampton, Gail Jenkins, Linda Wainwright, Jill McKay, Dianne Ford, "SIRT1 affects DNA methylation of polycomb group protein target genes, a hotspot of the epigenetic shift observed in ageing." Human Genomics, 2015.

The zinc finger protein ZNF658 regulates the transcription of genes involved in zinc homeostasis and affects ribosome biogenesis through the zinc transcriptional regulatory element

Published in Molecular and Cellular Biology, 2015

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Recommended citation: Ogo Ogo, John Tyson, Simon Cockell, Alison Howard, Ruth Valentine, Dianne Ford, "The zinc finger protein ZNF658 regulates the transcription of genes involved in zinc homeostasis and affects ribosome biogenesis through the zinc transcriptional regulatory element." Molecular and Cellular Biology, 2015.

Epigenetic landscape correlates with genetic subtype but does not predict outcome in childhood acute lymphoblastic leukemia

Published in Epigenetics, 2015

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Recommended citation: Alem Gabriel, Fadhel Lafta, Edward Schwalbe, Sirintra Nakjang, Simon Cockell, Alice Iliasova, Amir Enshaei, Claire Schwab, Vikki Rand, Steven Clifford, Sally Kinsey, Chris Mitchell, Ajay Vora, Christine Harrison, Anthony Moorman, Gordon Strathdee, "Epigenetic landscape correlates with genetic subtype but does not predict outcome in childhood acute lymphoblastic leukemia." Epigenetics, 2015.

A Transcriptional Signature of Fatigue Derived from Patients with Primary Sjögren's Syndrome

Published in PloS One, 2015

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Recommended citation: Katherine James, Shereen Al-Ali, Jessica Tarn, Simon Cockell, Colin Gillespie, Victoria Hindmarsh, James Locke, Sheryl Mitchell, Dennis Lendrem, Simon Bowman, Elizabeth Price, Colin Pease, Paul Emery, Peter Lanyon, John Hunter, Monica Gupta, Michele Bombardieri, Nurhan Sutcliffe, Costantino Pitzalis, John McLaren, Annie Cooper, Marian Regan, Ian Giles, David Isenberg, Vadivelu Saravanan, David Coady, Bhaskar Dasgupta, Neil McHugh, Steven Young-Min, Robert Moots, Nagui Gendi, Mohammed Akil, Bridget Griffiths, Anil Wipat, Julia Newton, David Jones, John Isaacs, Jennifer Hallinan, Wan-Fai Ng, "A Transcriptional Signature of Fatigue Derived from Patients with Primary Sjögren's Syndrome." PloS One, 2015.

A distributed computational search strategy for the identification of diagnostics targets: application to finding aptamer targets for methicillin-resistant staphylococci

Published in Journal of Integrative Bioinformatics, 2014

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Recommended citation: Keith Flanagan, Simon Cockell, Colin Harwood, Jennifer Hallinan, Sirintra Nakjang, Beth Lawry, Anil Wipat, "A distributed computational search strategy for the identification of diagnostics targets: application to finding aptamer targets for methicillin-resistant staphylococci." Journal of Integrative Bioinformatics, 2014.

Utility of B-13 progenitor-derived hepatocytes in hepatotoxicity and genotoxicity studies

Published in Toxicological Sciences: An Official Journal of the Society of Toxicology, 2014

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Recommended citation: Philip Probert, Git Chung, Simon Cockell, Loranne Agius, Pasquale Mosesso, Steven White, Fiona Oakley, Colin Brown, Matthew Wright, "Utility of B-13 progenitor-derived hepatocytes in hepatotoxicity and genotoxicity studies." Toxicological Sciences: An Official Journal of the Society of Toxicology, 2014.

Bayesian integration of networks without gold standards

Published in Bioinformatics (Oxford, England), 2012

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Recommended citation: Jochen Weile, Katherine James, Jennifer Hallinan, Simon Cockell, Phillip Lord, Anil Wipat, Darren Wilkinson, "Bayesian integration of networks without gold standards." Bioinformatics (Oxford, England), 2012.

BioStar: an online question & answer resource for the bioinformatics community

Published in PLoS computational biology, 2011

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Recommended citation: Laurence Parnell, Pierre Lindenbaum, Khader Shameer, Giovanni Dall'Olio, Daniel Swan, Lars Jensen, Simon Cockell, Brent Pedersen, Mary Mangan, Christopher Miller, Istvan Albert, "BioStar: an online question & answer resource for the bioinformatics community." PLoS computational biology, 2011.

Structure-function studies of an engineered scaffold protein derived from Stefin A. II: Development and applications of the SQT variant

Published in Protein engineering, design & selection: PEDS, 2011

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Recommended citation: Lukas Stadler, Toni Hoffmann, Darren Tomlinson, Qifeng Song, Tracy Lee, Michael Busby, Yvonne Nyathi, Elisenda Gendra, Christian Tiede, Keith Flanagan, Simon Cockell, Anil Wipat, Colin Harwood, Simon Wagner, Margaret Knowles, Jason Davis, Neil Keegan, Paul Ferrigno, "Structure-function studies of an engineered scaffold protein derived from Stefin A. II: Development and applications of the SQT variant." Protein engineering, design & selection: PEDS, 2011.

Customizable views on semantically integrated networks for systems biology

Published in Bioinformatics (Oxford, England), 2011

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Recommended citation: Jochen Weile, Matthew Pocock, Simon Cockell, Phillip Lord, James Dewar, Eva-Maria Holstein, Darren Wilkinson, David Lydall, Jennifer Hallinan, Anil Wipat, "Customizable views on semantically integrated networks for systems biology." Bioinformatics (Oxford, England), 2011.

Guidelines for reporting the use of gel image informatics in proteomics

Published in Nature Biotechnology, 2010

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Recommended citation: Christine Hoogland, Martin O'Gorman, Philippe Bogard, Frank Gibson, Matthias Berth, Simon Cockell, Andreas Ekefjärd, Ola Forsstrom-Olsson, Anna Kapferer, Mattias Nilsson, Salvador Martínez-Bartolomé, Juan Albar, Sira Echevarría-Zomeño, Montserrat Martínez-Gomariz, Johann Joets, Pierre-Alain Binz, Chris Taylor, Andrew Dowsey, Andrew Jones, "Guidelines for reporting the use of gel image informatics in proteomics." Nature Biotechnology, 2010.

Changes in protein expression profiles between a low phytic acid rice ( Oryza sativa L. Ssp. japonica) line and its parental line: a proteomic and bioinformatic approach

Published in Journal of Agricultural and Food Chemistry, 2010

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Recommended citation: Kaveh Emami, Nicholas Morris, Simon Cockell, Gabriela Golebiowska, Qing-Yao Shu, Angharad Gatehouse, "Changes in protein expression profiles between a low phytic acid rice ( Oryza sativa L. Ssp. japonica) line and its parental line: a proteomic and bioinformatic approach." Journal of Agricultural and Food Chemistry, 2010.

An integrated dataset for in silico drug discovery

Published in Journal of Integrative Bioinformatics, 2010

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Recommended citation: Simon Cockell, Jochen Weile, Phillip Lord, Claire Wipat, Dmytro Andriychenko, Matthew Pocock, Darren Wilkinson, Malcolm Young, Anil Wipat, "An integrated dataset for in silico drug discovery." Journal of Integrative Bioinformatics, 2010.