CASE PhD studentship in Bioinformatics available

I’m delighted to announce we’re offering a PhD studentship, commencing in October. I’ve spent most of my time on the Ondex project building an integrated network focussed on drug repositioning (see [cite source=’doi’]10.2390/biecoll-jib-2010-116[/cite]). I’m very excited that we’ve managed to secure a CASE studentship, in collaboration with Philippe Sanseau at GSK, to continue and considerably extend this work. I think this is a very exciting opportunity. Full details below.

Where? – Newcastle University – School of Computing Science

What? – Development of Novel Computational Approaches to Mine Integrated Datasets for Drug Repurposing Opportunities

The blurb

We invite applications for a CASE PhD studentship in Bioinformatics at Newcastle University in the North East of England. The project is a 3-year EPSRC PhD sponsored by GlaxoSmithKline (GSK) and involves the development of novel methods of finding new targets for existing drugs using data integration.

Ondex is a data integration computational platform for Systems Biology (SB). The student will research the optimization and application of Ondex integrated datasets to the identification of repurposing opportunities for existing compounds with a particular, but not exclusive, focus in the infectious diseases therapeutic area. The student will also use the dataset to explore the interplay between microbial targets and perturbations in the metabolic and community structure of the human gut microbiome.

An ideal student will have a background in computing science, good programming skills, preferably in Java and an interest in biology and bioinformatics. Applicants should also possess an upper second class undergraduate degree. Only students who meet the EPSRC home student requirements are eligible for full fees, other EU students are only eligible to support for the fees. Students from outside the EU are not eligible to apply – please see the EPSRC website for details. 

The studentship will start in October 2011, jointly supervised by Prof. Anil Wipat and Dr. Simon Cockell at Newcastle University, and Dr. Philippe Sanseau at GSK. The student will spend at least three months at GSK in Stevenage as part of the project. Home students are eligible for payment of full fees and an enhanced stipend of approximately £18,000 tax free. To apply, please send an email to [anil dot wipat at ncl dot ac dot uk] with CV (including the contact details of least two referees) and a cover letter indicating your suitability for the position. Please include “Application CASE PhD” in the subject of the email. Applications will be dealt with as they arrive – there is no closing date.



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